Research workbench
Structure of gldlm, the proton-powered motor that drives type IX protein secretion and gliding motility in schleiferia thermophila
Analyse Structure of gldlm, the proton-powered motor that drives type IX protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SAU
- Type
- protein
- Length
- 791 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gldm; Gliding motility protein gldl
- UniProt
- A0A085L0Z7, A0A369A7G0
- Pockets
- 10 · best druggability 0.85
Structure
electron microscopy · 4 distinct chains · 70% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gldm | protein | 219 | 70% helix, 5% strand | A0A085L0Z7 |
| B | Gldm | protein | 216 | 73% helix, 2% strand | A0A085L0Z7 |
| C, D, F, G | Gliding motility protein gldl | protein | 71 | 68% helix, 0% strand | A0A369A7G0 |
| E | Gliding motility protein gldl | protein | 72 | 67% helix, 0% strand | A0A369A7G0 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 769 | 0.85 | 0.88 | 67 | empty |
| 2 | 991 | 0.78 | 0.80 | 104 | empty |
| 3 | 402 | 0.74 | 0.84 | 45 | empty |
| 4 | 58 | 0.72 | 0.98 | 17 | empty |
| 5 | 323 | 0.70 | 0.83 | 29 | empty |
Interfaces
20 interfaces between chains.
- A–B · 2068 Ų buried · 18 hydrogen bonds · protein-protein
- C–G · 963 Ų buried · 7 hydrogen bonds · protein-protein
- E–F · 952 Ų buried · 6 hydrogen bonds · protein-protein
- D–E · 947 Ų buried · 4 hydrogen bonds · protein-protein
- F–G · 900 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 7SAU · Structure of GldLM, the proton-powered motor that drives Type IX protein secretion and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A085L0Z7
- Every structure of UniProt A0A369A7G0
- Elsewhere: RCSB PDB 7SAU · PDBe 7SAU · UniProt A0A085L0Z7 · UniProt A0A369A7G0
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