Research workbench
TRNA-like structure from brome mosaic virus
Analyse TRNA-like structure from brome mosaic virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SAM
- Type
- RNA
- Length
- 169 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral RNA
- Pockets
- 6 · best druggability 0.70
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral RNA | rna | 169 | — | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 986 | 0.70 | 0.76 | 44 | empty |
| 2 | 990 | 0.70 | 0.75 | 38 | empty |
| 3 | 767 | 0.70 | 0.77 | 35 | empty |
| 4 | 383 | 0.55 | 0.75 | 26 | empty |
| 5 | 116 | 0.49 | 0.81 | 13 | empty |
Compared structures
- 7SAM · tRNA-like Structure from Brome Mosaic Virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7SAM · PDBe 7SAM
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