Research workbench
Cryo-EM structure of dolphin prestin: sensor down II (expanded II) state
Analyse Cryo-EM structure of dolphin prestin: sensor down II (expanded II) state in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7S9C
- Type
- protein
- Length
- 1,340 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prestin
- UniProt
- D7PC76
- Pockets
- 20 · best druggability 0.87
Structure
electron microscopy · 1 distinct chain · 56% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Prestin | protein | 670 | 56% helix, 4% strand | D7PC76 |
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 989 | 0.87 | 0.88 | 97 | empty |
| 2 | 1167 | 0.85 | 0.86 | 135 | empty |
| 3 | 655 | 0.82 | 0.86 | 69 | empty |
| 4 | 516 | 0.80 | 0.86 | 55 | empty |
| 5 | 894 | 0.79 | 0.81 | 83 | empty |
Interfaces
1 interface between chains.
- A–B · 3479 Ų buried · 57 hydrogen bonds · protein-protein
Compared structures
- 7S9C · Cryo-EM Structure of dolphin Prestin: Sensor Down II (Expanded II) state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D7PC76
- Elsewhere: RCSB PDB 7S9C · PDBe 7S9C · UniProt D7PC76
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