Research workbench
M. xanthus encapsulin enca bound to encc targeting peptide
Analyse M. xanthus encapsulin enca bound to encc targeting peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7S4Q
- Type
- protein
- Length
- 861 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Enca; Encc targeting peptide
- UniProt
- Q1D6H4, Q1D3Y8
- Pockets
- 9 · best druggability 0.75
Structure
electron microscopy · 3 distinct chains · 28% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Enca | protein | 277 | 28% helix, 18% strand | Q1D6H4 |
| C | Enca | protein | 271 | 28% helix, 19% strand | Q1D6H4 |
| F, G, H | Encc targeting peptide | protein | 12 | 0% helix, 0% strand | Q1D3Y8 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.75 | 0.95 | 25 | empty |
| 2 | 94 | 0.74 | 0.96 | 24 | empty |
| 3 | 265 | 0.51 | 0.74 | 33 | empty |
| 4 | 191 | 0.45 | 0.74 | 29 | empty |
| 5 | 98 | 0.44 | 0.79 | 19 | empty |
Interfaces
6 interfaces between chains.
- A–F · 671 Ų buried · 13 hydrogen bonds · protein-protein
- B–G · 650 Ų buried · 7 hydrogen bonds · protein-protein
- C–H · 613 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 513 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 225 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7S4Q · M. xanthus encapsulin EncA bound to EncC targeting peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1D6H4
- Every structure of UniProt Q1D3Y8
- Elsewhere: RCSB PDB 7S4Q · PDBe 7S4Q · UniProt Q1D6H4 · UniProt Q1D3Y8
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