Research workbench
Cryoem structure of vibrio cholerae transposon TN6677 aaa+ ATPase tnsc
Analyse Cryoem structure of vibrio cholerae transposon TN6677 aaa+ ATPase tnsc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RZY
- Type
- protein
- Length
- 2,177 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TN6677 vibrio cholerae transposon tnsc (vchtnsc)
- Ligands
- ATP
- Pockets
- 20 · best druggability 0.81
Structure
electron microscopy · 1 distinct chain · 47% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1, 2, 3, 4, 5, 6, 7 | TN6677 vibrio cholerae transposon tnsc (vchtnsc) | protein | 311 | 47% helix, 5% strand | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 7 copies · chains 1, 2, 7, 3, 4, 5, 6
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 878 | 0.81 | 0.83 | 90 | ATP |
| 2 | 826 | 0.81 | 0.83 | 93 | ATP |
| 3 | 830 | 0.80 | 0.83 | 86 | ATP |
| 4 | 896 | 0.80 | 0.82 | 84 | ATP |
| 5 | 866 | 0.79 | 0.82 | 88 | ATP |
Interfaces
7 interfaces between chains.
- 1–2 · 1686 Ų buried · 23 hydrogen bonds · protein-protein
- 2–3 · 1619 Ų buried · 17 hydrogen bonds · protein-protein
- 6–7 · 1573 Ų buried · 26 hydrogen bonds · protein-protein
- 4–5 · 1566 Ų buried · 26 hydrogen bonds · protein-protein
- 3–4 · 1559 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 covalent (covalent ligand).
Compared structures
- 7RZY · CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7RZY · PDBe 7RZY
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.