Research workbench

Cryo-EM MAP of kifbp

Analyse Cryo-EM MAP of kifbp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7RYQ
Type: protein
Length: 527 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kif-binding protein
UniProt: Q96EK5
Pockets: 15 · best druggability 0.80

Structure

electron microscopy · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Kif-binding protein	protein	527	74% helix, 0% strand	Q96EK5

Pockets

15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	804	0.80	0.83	98	empty
2	273	0.60	0.79	27	empty
3	200	0.56	0.79	36	empty
4	227	0.56	0.78	35	empty
5	138	0.52	0.80	27	empty

Compared structures

7RYQ · Cryo-EM map of KIFBP · the same entry in another collection · chain B against B, TM-score 1.00
Q96EK5 · AlphaFold monomer V2.0 prediction for kif-binding protein (Q96EK5) · a predicted model of the same protein · chain B against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96EK5
Elsewhere: RCSB PDB 7RYQ · PDBe 7RYQ · UniProt Q96EK5

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