Research workbench
SAPIBOV5 procapsid structure including size redirecting protein ccm
Analyse SAPIBOV5 procapsid structure including size redirecting protein ccm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RWZ
- Type
- protein
- Length
- 1,038 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cos capsid morphogenesis protein (ccm); Major capsid protein
- UniProt
- E2FZQ5, A0A7H9CBC0
- Pockets
- 14 · best druggability 0.72
Structure
electron microscopy · 4 distinct chains · 29% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cos capsid morphogenesis protein (ccm) | protein | 260 | 35% helix, 17% strand | E2FZQ5 |
| B | Major capsid protein | protein | 265 | 25% helix, 18% strand | A0A7H9CBC0 |
| C | Major capsid protein | protein | 260 | 27% helix, 22% strand | A0A7H9CBC0 |
| D | Major capsid protein | protein | 253 | 28% helix, 16% strand | A0A7H9CBC0 |
Pockets
14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 609 | 0.72 | 0.80 | 61 | empty |
| 2 | 615 | 0.71 | 0.79 | 64 | empty |
| 3 | 489 | 0.64 | 0.77 | 49 | empty |
| 4 | 304 | 0.62 | 0.79 | 38 | empty |
| 5 | 207 | 0.53 | 0.77 | 25 | empty |
Interfaces
3 interfaces between chains.
- B–C · 2287 Ų buried · 16 hydrogen bonds · protein-protein
- C–D · 2147 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 147 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7RWZ · SaPIbov5 procapsid structure including size redirecting protein Ccm · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2FZQ5
- Every structure of UniProt A0A7H9CBC0
- Elsewhere: RCSB PDB 7RWZ · PDBe 7RWZ · UniProt E2FZQ5 · UniProt A0A7H9CBC0
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