Research workbench
Structure of saved domain of CAP5 from lactococcus lactis in complex with cgamp
Analyse Structure of saved domain of CAP5 from lactococcus lactis in complex with cgamp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RWS
- Type
- protein
- Length
- 255 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Saved domain-containing protein
- UniProt
- A0A1E7G0A2
- Ligands
- 4UR
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Saved domain-containing protein | protein | 255 | 30% helix, 26% strand | A0A1E7G0A2 |
Ligands and binding sites
- 4UR · 3'2'-cGAMP · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.43 | 0.75 | 24 | 4UR |
| 2 | 63 | 0.30 | 0.74 | 18 | empty |
Compared structures
- 7RWS · Structure of SAVED domain of Cap5 from Lactococcus lactis in complex with cGAMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1E7G0A2
- Elsewhere: RCSB PDB 7RWS · PDBe 7RWS · UniProt A0A1E7G0A2
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