Research workbench
Human pxr lbd bound to GSK003
Analyse Human pxr lbd bound to GSK003 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RIO
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isoform 1C of nuclear receptor subfamily 1 group I member 2
- UniProt
- O75469
- Ligands
- 5YX
- Pockets
- 3 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isoform 1C of nuclear receptor subfamily 1 group I member 2 | protein | 270 | 61% helix, 8% strand | O75469 |
Ligands and binding sites
- 5YX · N-[3-(2-tert-butyl-5-{2-[2-(methanesulfonyl) ethyl]pyrimidin-4-yl}-1,3-thiazol-4-yl)-2-fluorophenyl]-2,5-difluorobenzene-1-sulfonamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 500 | 0.85 | 0.91 | 39 | 5YX |
| 2 | 80 | 0.36 | 0.76 | 18 | empty |
| 3 | 53 | 0.28 | 0.75 | 17 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75469
- Elsewhere: RCSB PDB 7RIO · PDBe 7RIO · UniProt O75469
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