Research workbench
Domain 1 of starch adherence system protein 20 (SAS20) from ruminococcus bromii
Analyse Domain 1 of starch adherence system protein 20 (SAS20) from ruminococcus bromii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RAW
- Type
- protein
- Length
- 235 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dockerin domain-containing protein
- UniProt
- A0A2N0URA4
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dockerin domain-containing protein | protein | 235 | 25% helix, 28% strand | A0A2N0URA4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.52 | 0.78 | 31 | empty |
| 2 | 73 | 0.35 | 0.76 | 18 | empty |
Compared structures
- 7RAW · Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2N0URA4
- Elsewhere: RCSB PDB 7RAW · PDBe 7RAW · UniProt A0A2N0URA4
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