Research workbench
Methanococcus maripaludis chaperonin, closed conformation 3
Analyse Methanococcus maripaludis chaperonin, closed conformation 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R9U
- Type
- protein
- Length
- 505 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperonin
- UniProt
- Q877G8
- Pockets
- 6 · best druggability 0.83
Structure
electron microscopy · 1 distinct chain · 44% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| J | Chaperonin | protein | 505 | 44% helix, 9% strand | Q877G8 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 934 | 0.83 | 0.84 | 97 | empty |
| 2 | 305 | 0.74 | 0.86 | 47 | empty |
| 3 | 123 | 0.73 | 0.93 | 36 | empty |
| 4 | 119 | 0.60 | 0.85 | 20 | empty |
| 5 | 87 | 0.37 | 0.76 | 19 | empty |
Compared structures
- 7R9U · Methanococcus maripaludis chaperonin, closed conformation 3 · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q877G8
- Elsewhere: RCSB PDB 7R9U · PDBe 7R9U · UniProt Q877G8
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