Research workbench
Methanococcus maripaludis chaperonin, closed conformation 2
Analyse Methanococcus maripaludis chaperonin, closed conformation 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R9M
- Type
- protein
- Length
- 505 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperonin
- UniProt
- Q877G8
- Pockets
- 11 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| J | Chaperonin | protein | 505 | 47% helix, 8% strand | Q877G8 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 619 | 0.82 | 0.87 | 70 | empty |
| 2 | 129 | 0.78 | 0.95 | 32 | empty |
| 3 | 244 | 0.71 | 0.86 | 38 | empty |
| 4 | 61 | 0.52 | 0.87 | 23 | empty |
| 5 | 121 | 0.50 | 0.80 | 16 | empty |
Compared structures
- 7R9M · Methanococcus maripaludis chaperonin, closed conformation 2 · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q877G8
- Elsewhere: RCSB PDB 7R9M · PDBe 7R9M · UniProt Q877G8
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