Research workbench
Exon-free state of the tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric construct
Analyse Exon-free state of the tetrahymena group I intron, symmetry-expanded monomer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R6N
- Type
- RNA
- Length
- 354 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Group I intron
- Ligands
- MG
- Pockets
- 19 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Group I intron | rna | 354 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 12 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
19 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.73 | 0.92 | 16 | MG |
| 2 | 732 | 0.70 | 0.78 | 41 | MG |
| 3 | 835 | 0.67 | 0.75 | 35 | MG |
| 4 | 487 | 0.62 | 0.77 | 25 | empty |
| 5 | 310 | 0.62 | 0.80 | 21 | MG |
Compared structures
- 7R6N · Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7R6N · PDBe 7R6N
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