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Crystal structure of a bacterial cyclic ump synthase from burkholderia cepacia LK29
Analyse Crystal structure of a bacterial cyclic ump synthase from burkholderia cepacia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R65
- Type
- protein
- Length
- 916 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ADENYLATE/GUANYLATE cyclase
- UniProt
- A0A0J5ZXG5
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | ADENYLATE/GUANYLATE cyclase | protein | 229 | 40% helix, 31% strand | A0A0J5ZXG5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1075 | 0.75 | 0.78 | 94 | empty |
| 2 | 438 | 0.72 | 0.82 | 60 | empty |
| 3 | 403 | 0.71 | 0.82 | 60 | empty |
| 4 | 53 | 0.37 | 0.81 | 15 | empty |
Interfaces
5 interfaces between chains.
- A–B · 3293 Ų buried · 34 hydrogen bonds · protein-protein
- C–D · 3287 Ų buried · 31 hydrogen bonds · protein-protein
- B–D · 383 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 133 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 39 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 7R65 · Crystal structure of a bacterial cyclic UMP synthase from Burkholderia cepacia LK29 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0J5ZXG5
- Elsewhere: RCSB PDB 7R65 · PDBe 7R65 · UniProt A0A0J5ZXG5
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