Research workbench
Structure of E. COLI ybab
Analyse Structure of E. COLI ybab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1PUG
- Type
- protein
- Length
- 323 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical UPF0133 protein ybab
- UniProt
- P0A8B5
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 4 distinct chains · 52% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical UPF0133 protein ybab | protein | 94 | 54% helix, 19% strand | P0A8B5 |
| B | Hypothetical UPF0133 protein ybab | protein | 74 | 50% helix, 24% strand | P0A8B5 |
| C | Hypothetical UPF0133 protein ybab | protein | 80 | 51% helix, 23% strand | P0A8B5 |
| D | Hypothetical UPF0133 protein ybab | protein | 75 | 51% helix, 23% strand | P0A8B5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.46 | 0.74 | 24 | empty |
| 2 | 94 | 0.38 | 0.76 | 18 | empty |
Interfaces
2 interfaces between chains.
- C–D · 893 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 875 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8B5
- Elsewhere: RCSB PDB 1PUG · PDBe 1PUG · UniProt P0A8B5
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