Research workbench

Yeast GID10 bound to ART2 PRO/N-degron

Analyse Yeast GID10 bound to ART2 PRO/N-degron in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7QQY
Type: protein
Length: 224 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein YGR066C; ECM21
UniProt: P53242
Ligands: CL

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein YGR066C	protein	216	13% helix, 38% strand	P53242
B	ECM21	protein	8	0% helix, 25% strand	—

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 635 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

7QQY · yeast Gid10 bound to Art2 Pro/N-degron · the same entry in another collection · chain A against A, TM-score 1.00
P53242 · AlphaFold monomer V2.0 prediction for uncharacterized protein YGR066C (P53242) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53242
Elsewhere: RCSB PDB 7QQY · PDBe 7QQY · UniProt P53242

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