Research workbench
Outward-facing apo-form of auxin transporter PIN8
Analyse Outward-facing apo-form of auxin transporter PIN8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QP9
- Type
- protein
- Length
- 654 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Auxin efflux carrier component 8
- UniProt
- Q9LFP6
- Ligands
- DLP
- Pockets
- 8 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Auxin efflux carrier component 8 | protein | 327 | 78% helix, 0% strand | Q9LFP6 |
Ligands and binding sites
- DLP · 1,2-dilinoleoyl-sn-glycero-3-phosphocholine · ligand · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 319 | 0.65 | 0.80 | 41 | empty |
| 2 | 327 | 0.64 | 0.79 | 42 | empty |
| 3 | 87 | 0.61 | 0.88 | 17 | empty |
| 4 | 91 | 0.57 | 0.85 | 19 | empty |
| 5 | 261 | 0.51 | 0.74 | 27 | DLP |
Interfaces
1 interface between chains.
- A–B · 1590 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LFP6
- Elsewhere: RCSB PDB 7QP9 · PDBe 7QP9 · UniProt Q9LFP6
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