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Structure of the orange carotenoid protein from planktothrix agardhii binding canthaxanthin in the C2 space group
Analyse Structure of the orange carotenoid protein from planktothrix agardhii binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QCZ
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orange carotenoid-binding protein
- UniProt
- A0A1J1JHR9
- Ligands
- 45D
- Pockets
- 2 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orange carotenoid-binding protein | protein | 309 | 46% helix, 17% strand | A0A1J1JHR9 |
Ligands and binding sites
- 45D · beta,beta-carotene-4,4'-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 521 | 0.88 | 0.94 | 58 | 45D |
| 2 | 98 | 0.32 | 0.72 | 26 | empty |
Compared structures
- 7QCZ · Structure of the orange carotenoid protein from Planktothrix agardhii binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1J1JHR9
- Elsewhere: RCSB PDB 7QCZ · PDBe 7QCZ · UniProt A0A1J1JHR9
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