Research workbench
Crystal structure cadmium translocating P-type ATPase
Analyse Crystal structure cadmium translocating P-type ATPase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QBZ
- Type
- protein
- Length
- 638 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cadmium translocating P-type ATPase
- UniProt
- A3T2G5
- Ligands
- ALF, MG
- Pockets
- 8 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cadmium translocating P-type ATPase | protein | 638 | 49% helix, 18% strand | A3T2G5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 869 | 0.72 | 0.77 | 78 | MG |
| 2 | 299 | 0.67 | 0.82 | 38 | empty |
| 3 | 115 | 0.47 | 0.79 | 30 | empty |
| 4 | 53 | 0.39 | 0.81 | 18 | empty |
| 5 | 52 | 0.36 | 0.80 | 11 | empty |
Compared structures
- 7QBZ · Crystal structure Cadmium translocating P-type ATPase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3T2G5
- Elsewhere: RCSB PDB 7QBZ · PDBe 7QBZ · UniProt A3T2G5
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