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Structure of the bacterial type VI secretion system effector rhsa.
Analyse Structure of the bacterial type VI secretion system effector rhsa. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7Q97
- Type
- protein
- Length
- 2,094 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhs family protein
- UniProt
- Q4K3M9
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 1 distinct chain · 3% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rhs family protein | protein | 1047 | 3% helix, 49% strand | Q4K3M9 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 506 | 0.80 | 0.86 | 75 | empty |
| 2 | 732 | 0.79 | 0.83 | 66 | empty |
| 3 | 669 | 0.79 | 0.84 | 59 | empty |
| 4 | 427 | 0.78 | 0.87 | 64 | empty |
| 5 | 1188 | 0.78 | 0.80 | 114 | empty |
Interfaces
1 interface between chains.
- A–B · 1454 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 7Q97 · Structure of the bacterial type VI secretion system effector RhsA. · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4K3M9
- Elsewhere: RCSB PDB 7Q97 · PDBe 7Q97 · UniProt Q4K3M9
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