Research workbench
Arches protomer (trimer of TRWG/VIRB8PERI) structure from the fully- assembled R388 type IV secretion system determined by cryo-EM.
Analyse Arches protomer (trimer of TRWG/VIRB8PERI) structure from the fully- assembled… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7Q1V
- Type
- protein
- Length
- 411 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trwg protein
- UniProt
- O50335
- Pockets
- 3 · best druggability 0.60
Structure
electron microscopy · 1 distinct chain · 32% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, E, F | Trwg protein | protein | 137 | 32% helix, 35% strand | O50335 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 601 | 0.60 | 0.74 | 77 | empty |
| 2 | 439 | 0.57 | 0.74 | 48 | empty |
| 3 | 433 | 0.56 | 0.74 | 58 | empty |
Interfaces
2 interfaces between chains.
- D–E · 138 Ų buried · 7 hydrogen bonds · protein-protein
- E–F · 84 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7Q1V · Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O50335
- Elsewhere: RCSB PDB 7Q1V · PDBe 7Q1V · UniProt O50335
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.