Research workbench
Zn-free structure of lipocalin-like milk protein, inspired from diploptera punctata, expressed in saccharomyces cerevisiae
Analyse Zn-free structure of lipocalin-like milk protein, inspired from diploptera… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7Q02
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Milk protein
- UniProt
- Q6SVB5
- Ligands
- PAM
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Milk protein | protein | 153 | 10% helix, 46% strand | Q6SVB5 |
Ligands and binding sites
- PAM · Palmitoleic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.80 | 0.94 | 31 | PAM |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7Q02 · Zn-free structure of lipocalin-like Milk protein, inspired from Diploptera punctata… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6SVB5
- Elsewhere: RCSB PDB 7Q02 · PDBe 7Q02 · UniProt Q6SVB5
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