Research workbench
Hbc-F97L premature secretion phenotype
Analyse Hbc-F97L premature secretion phenotype in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PZ9
- Type
- protein
- Length
- 572 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- P03146
- Pockets
- 7 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, C, D | Capsid protein | protein | 143 | 72% helix, 0% strand | P03146 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.76 | 0.94 | 28 | empty |
| 2 | 329 | 0.73 | 0.85 | 41 | empty |
| 3 | 161 | 0.72 | 0.90 | 25 | empty |
| 4 | 124 | 0.64 | 0.87 | 21 | empty |
| 5 | 59 | 0.30 | 0.74 | 13 | empty |
Interfaces
3 interfaces between chains.
- C–D · 2052 Ų buried · 15 hydrogen bonds · protein-protein
- B–A · 2006 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 694 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7PZ9 · HBc-F97L premature secretion phenotype · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03146
- Elsewhere: RCSB PDB 7PZ9 · PDBe 7PZ9 · UniProt P03146
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