Research workbench
Delta-latroinsectotoxin dimer
Analyse Delta-latroinsectotoxin dimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PTY
- Type
- protein
- Length
- 1,715 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Delta-latroinsectotoxin-LT1A
- UniProt
- Q25338
- Pockets
- 20 · best druggability 0.85
Structure
electron microscopy · 2 distinct chains · 56% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Delta-latroinsectotoxin-LT1A | protein | 850 | 56% helix, 3% strand | Q25338 |
| B | Delta-latroinsectotoxin-LT1A | protein | 865 | 55% helix, 2% strand | Q25338 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 973 | 0.85 | 0.85 | 103 | empty |
| 2 | 488 | 0.81 | 0.88 | 78 | empty |
| 3 | 173 | 0.77 | 0.93 | 33 | empty |
| 4 | 495 | 0.76 | 0.84 | 64 | empty |
| 5 | 335 | 0.75 | 0.86 | 61 | empty |
Interfaces
1 interface between chains.
- A–B · 938 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q25338
- Elsewhere: RCSB PDB 7PTY · PDBe 7PTY · UniProt Q25338
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