Research workbench

SCO3201 with putative ligand

Analyse SCO3201 with putative ligand in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7PT0
Type: protein
Length: 399 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tetr family transcriptional regulator
UniProt: A0A6M9XK53
Ligands: SPD
Pockets: 1 · best druggability 0.87

Structure

x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tetr family transcriptional regulator	protein	201	77% helix, 0% strand	A0A6M9XK53
B	Tetr family transcriptional regulator	protein	198	75% helix, 0% strand	A0A6M9XK53

Ligands and binding sites

SPD · Spermidine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1120	0.87	0.87	115	SPD

Interfaces

1 interface between chains.

A–B · 974 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

7PT0 · SCO3201 with putative ligand · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A6M9XK53
Elsewhere: RCSB PDB 7PT0 · PDBe 7PT0 · UniProt A0A6M9XK53

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