Research workbench
Photorhabdus laumondii T6SS-associated rhs protein carrying the TRE23 toxin domain
Analyse Photorhabdus laumondii T6SS-associated rhs protein carrying the TRE23 toxin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PQ5
- Type
- protein
- Length
- 1,047 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRE23
- UniProt
- Q7N9I0
- Pockets
- 16 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain · 1% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | TRE23 | protein | 1047 | 1% helix, 50% strand | Q7N9I0 |
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.79 | 0.89 | 43 | empty |
| 2 | 450 | 0.76 | 0.85 | 67 | empty |
| 3 | 55 | 0.70 | 0.97 | 22 | empty |
| 4 | 442 | 0.68 | 0.80 | 48 | empty |
| 5 | 475 | 0.68 | 0.79 | 57 | empty |
Compared structures
- 7PQ5 · Photorhabdus laumondii T6SS-associated Rhs protein carrying the Tre23 toxin domain · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7N9I0
- Elsewhere: RCSB PDB 7PQ5 · PDBe 7PQ5 · UniProt Q7N9I0
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