Research workbench
Complex of rice blast (magnaporthe oryzae) effector protein avr-pii with the host target EXO70F2 from rice (oryza sativa)
Analyse Complex of rice blast (magnaporthe oryzae) effector protein avr-pii with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PP2
- Type
- protein
- Length
- 469 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Exocyst subunit EXO70 family protein; Avr-pii protein
- UniProt
- A0A0N7KFC4, C4B8B7
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exocyst subunit EXO70 family protein | protein | 442 | 74% helix, 1% strand | A0A0N7KFC4 |
| B | Avr-pii protein | protein | 27 | 19% helix, 19% strand | C4B8B7 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.51 | 0.81 | 22 | empty |
| 2 | 50 | 0.48 | 0.86 | 12 | empty |
| 3 | 54 | 0.41 | 0.81 | 17 | empty |
| 4 | 91 | 0.32 | 0.72 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 888 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 7PP2 · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-Pii with the host target… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0N7KFC4
- Every structure of UniProt C4B8B7
- Elsewhere: RCSB PDB 7PP2 · PDBe 7PP2 · UniProt A0A0N7KFC4 · UniProt C4B8B7
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