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Crystal structure of zad-domain of M1BP protein from D.MELANOGASTER

Analyse Crystal structure of zad-domain of M1BP protein from D.MELANOGASTER in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7PO9
Type: protein
Length: 172 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LD30467P
UniProt: Q9VHM3
Ligands: ZN
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 49% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LD30467P	protein	88	53% helix, 6% strand	Q9VHM3
B	LD30467P	protein	84	45% helix, 6% strand	Q9VHM3

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.35	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 1468 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

7PO9 · Crystal structure of ZAD-domain of M1BP protein from D.melanogaster · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VHM3
Elsewhere: RCSB PDB 7PO9 · PDBe 7PO9 · UniProt Q9VHM3

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