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C terminal domain of nipah virus phosphoprotein fused to the ntail alpha more of the nucleoprotein.
Analyse C terminal domain of nipah virus phosphoprotein fused to the ntail alpha more… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PNO
- Type
- protein
- Length
- 486 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoprotein; Alpha more of nipah virus nucleoprotein tail
- UniProt
- Q9IK91
- Pockets
- 8 · best druggability 0.54
Structure
x-ray diffraction · 8 distinct chains · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, M | Phosphoprotein | protein | 49 | 82% helix, 0% strand | Q9IK91 |
| B | Alpha more of nipah virus nucleoprotein tail | protein | 23 | 87% helix, 0% strand | — |
| D | Alpha more of nipah virus nucleoprotein tail | protein | 24 | 88% helix, 0% strand | — |
| F | Alpha more of nipah virus nucleoprotein tail | protein | 23 | 91% helix, 0% strand | — |
| H | Alpha more of nipah virus nucleoprotein tail | protein | 21 | 90% helix, 0% strand | — |
| J | Alpha more of nipah virus nucleoprotein tail | protein | 14 | 86% helix, 0% strand | — |
| L | Alpha more of nipah virus nucleoprotein tail | protein | 18 | 89% helix, 0% strand | — |
| N | Alpha more of nipah virus nucleoprotein tail | protein | 20 | 90% helix, 0% strand | — |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.54 | 0.78 | 39 | empty |
| 2 | 155 | 0.47 | 0.77 | 26 | empty |
| 3 | 156 | 0.46 | 0.76 | 28 | empty |
| 4 | 172 | 0.45 | 0.76 | 26 | empty |
| 5 | 90 | 0.43 | 0.79 | 20 | empty |
Interfaces
23 interfaces between chains.
- A–B · 514 Ų buried · 6 hydrogen bonds · protein-protein
- M–N · 514 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 512 Ų buried · 9 hydrogen bonds · protein-protein
- G–H · 509 Ų buried · 5 hydrogen bonds · protein-protein
- A–I · 487 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 7PNO · C terminal domain of Nipah Virus Phosphoprotein fused to the Ntail alpha more of the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9IK91
- Elsewhere: RCSB PDB 7PNO · PDBe 7PNO · UniProt Q9IK91
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