Research workbench
NAVAE1/SP1CTDP (ddm)
Analyse NAVAE1/SP1CTDP (ddm) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PGH
- Type
- protein
- Length
- 1,043 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0ABW0, Q6TMY8
- Ligands
- D12
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| F | — | protein | 133 | — | Q0ABW0, Q6TMY8 |
| A, C | — | protein | 131 | — | Q0ABW0, Q6TMY8 |
| B | — | protein | 126 | — | Q0ABW0, Q6TMY8 |
| D | — | protein | 127 | — | Q0ABW0, Q6TMY8 |
| E | — | protein | 138 | — | Q0ABW0, Q6TMY8 |
| G | — | protein | 129 | — | Q0ABW0, Q6TMY8 |
| H | — | protein | 128 | — | Q0ABW0, Q6TMY8 |
Ligands and binding sites
- D12 · Dodecane · ligand · 4 copies · chains A, C, G, H
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · 9 copies · chains F, D, A, E, G, H
- 12P · Dodecaethylene glycol · additive · 3 copies · chains C, H
- 1PE · Pentaethylene glycol · additive · 2 copies · chains H
- OCT · N-octane · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PGH · NaVAe1/Sp1CTDp (DDM) · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0ABW0
- Every structure of UniProt Q6TMY8
- Elsewhere: RCSB PDB 7PGH · PDBe 7PGH · UniProt Q0ABW0 · UniProt Q6TMY8
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