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Structure of the SPORULATION/GERMINATION protein yhcn from bacillus subtilis

Analyse Structure of the SPORULATION/GERMINATION protein yhcn from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7PEG
Type: protein
Length: 216 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable spore germination lipoprotein yhcn
UniProt: P54598
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable spore germination lipoprotein yhcn	protein	109	45% helix, 22% strand	P54598
B	Probable spore germination lipoprotein yhcn	protein	107	47% helix, 21% strand	P54598

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.44	0.76	22	empty

Interfaces

1 interface between chains.

A–B · 432 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

7PEG · Structure of the sporulation/germination protein YhcN from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
P54598 · AlphaFold monomer V2.0 prediction for probable spore germination lipoprotein yhcn (P54598) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54598
Elsewhere: RCSB PDB 7PEG · PDBe 7PEG · UniProt P54598

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