Research workbench
Pre-catalytic complex of 10-23 dnazyme with RNA target
Analyse Pre-catalytic complex of 10-23 dnazyme with RNA target in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PDU
- Type
- DNA + RNA
- Length
- 52 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 10-23 dnazyme (33-mer); RNA target (19-mer)
- Pockets
- 2 · best druggability 0.44
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 10-23 dnazyme (33-mer) | dna | 33 | — | — |
| B | RNA target (19-mer) | rna | 19 | — | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.44 | 0.75 | 16 | empty |
| 2 | 50 | 0.30 | 0.77 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1474 Ų buried · 135 hydrogen bonds · nucleic-nucleic
Compared structures
- 7PDU · Pre-catalytic complex of 10-23 DNAzyme with RNA target · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7PDU · PDBe 7PDU
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.