Research workbench

Helicobacter pylori RNase J

Analyse Helicobacter pylori RNase J in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7PCR
Type: protein
Length: 553 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribonuclease J
EC: 3.1.-.-
UniProt: P56185
Pockets: 3 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribonuclease J (EC 3.1.-.-)	protein	553	36% helix, 26% strand	P56185

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	374	0.75	0.85	57	empty
2	491	0.69	0.80	62	empty
3	121	0.58	0.85	32	empty

Compared structures

7PCR · Helicobacter pylori RNase J · the same entry in another collection · chain A against A, TM-score 1.00
P56185 · AlphaFold monomer V2.0 prediction for ribonuclease J (P56185) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56185
Elsewhere: RCSB PDB 7PCR · PDBe 7PCR · UniProt P56185

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