Research workbench
DNA-binding domain of a P53 homolog from the hydrothermal vent annelid alvinella pompejana
Analyse DNA-binding domain of a P53 homolog from the hydrothermal vent annelid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PC6
- Type
- protein
- Length
- 1,525 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- ZN
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G | — | protein | 193 | — | — |
| B | — | protein | 190 | — | — |
| C | — | protein | 189 | — | — |
| D | — | protein | 190 | — | — |
| E | — | protein | 192 | — | — |
| F | — | protein | 186 | — | — |
| H | — | protein | 192 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, D, E, F, G, H
- EDO · 1,2-ethanediol · additive · 4 copies · chains B, D, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PC6 · DNA-binding domain of a p53 homolog from the hydrothermal vent annelid Alvinella pompejana · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7PC6 · PDBe 7PC6
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