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Crystal structure of paradendryphiella salina PL7A alginate lyase in complex with tetra-mannuronic acid products

Analyse Crystal structure of paradendryphiella salina PL7A alginate lyase in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7P90
Type: protein
Length: 226 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alginate lyase (PL7)
UniProt: A0A485PVH1
Ligands: MAW, BEM
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alginate lyase (PL7)	protein	226	8% helix, 55% strand	A0A485PVH1

Ligands and binding sites

MAW · 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid · ligand · chains A
BEM · beta-D-mannopyranuronic acid · sugar · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.25	0.73	21	BEM, MAW

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

7P90 · Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A0A485PVH1
Elsewhere: RCSB PDB 7P90 · PDBe 7P90 · UniProt A0A485PVH1

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