Research workbench
GLNK1 from methanothermococcus thermolithotrophicus with dadp at a resolution of 1.94 a
Analyse GLNK1 from methanothermococcus thermolithotrophicus with dadp at a resolution… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7P4V
- Type
- protein
- Length
- 113 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLNK1 from methanothermococcus thermolithotrophicus
- Ligands
- DAT, CL
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GLNK1 from methanothermococcus thermolithotrophicus | protein | 113 | 27% helix, 40% strand | — |
Ligands and binding sites
- DAT · 2'-deoxyadenosine-5'-diphosphate · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.36 | 0.77 | 18 | DAT |
Compared structures
- 7P4V · GlnK1 from Methanothermococcus thermolithotrophicus with dADP at a resolution of 1.94 A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7P4V · PDBe 7P4V
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