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Structure of cggbe in P212121 space group

Analyse Structure of cggbe in P212121 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7P45
Type: protein
Length: 659 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 1,4-alpha-glucan-branching enzyme
EC: 2.4.1.18
UniProt: Q6FJV0
Pockets: 8 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	1,4-alpha-glucan-branching enzyme (EC 2.4.1.18)	protein	659	29% helix, 22% strand	Q6FJV0

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	293	0.66	0.82	25	EDO
2	244	0.58	0.79	40	EDO
3	127	0.49	0.80	22	EDO
4	65	0.46	0.83	20	empty
5	64	0.39	0.79	18	EDO

Compared structures

7P45 · Structure of CgGBE in P212121 space group · the same entry in another collection · chain A against A, TM-score 1.00
Q6FJV0 · AlphaFold monomer V2.0 prediction for 1,4-alpha-glucan-branching enzyme (Q6FJV0) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6FJV0
Elsewhere: RCSB PDB 7P45 · PDBe 7P45 · UniProt Q6FJV0

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