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Structure of cggbe in P21212 space group

Analyse Structure of cggbe in P21212 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7P44
Type: protein
Length: 1,387 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 1,4-alpha-glucan-branching enzyme
EC: 2.4.1.18
UniProt: Q6FJV0
Pockets: 16 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	1,4-alpha-glucan-branching enzyme (EC 2.4.1.18)	protein	687	31% helix, 22% strand	Q6FJV0
B	1,4-alpha-glucan-branching enzyme (EC 2.4.1.18)	protein	700	30% helix, 21% strand	Q6FJV0

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	652	0.73	0.80	60	empty
2	69	0.61	0.90	22	empty
3	247	0.61	0.80	28	EDO
4	368	0.57	0.75	34	empty
5	253	0.56	0.77	28	empty

Interfaces

1 interface between chains.

A–B · 581 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

7P44 · Structure of CgGBE in P21212 space group · the same entry in another collection · chain A against A, TM-score 1.00
Q6FJV0 · AlphaFold monomer V2.0 prediction for 1,4-alpha-glucan-branching enzyme (Q6FJV0) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6FJV0
Elsewhere: RCSB PDB 7P44 · PDBe 7P44 · UniProt Q6FJV0

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