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N-terminal domain of cgi-99

Analyse N-terminal domain of cgi-99 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7P3A
Type: protein
Length: 197 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA transcription, translation and transport factor protein
UniProt: Q9Y224
Ligands: CL

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA transcription, translation and transport factor protein	protein	95	73% helix, 0% strand	Q9Y224
B	RNA transcription, translation and transport factor protein	protein	102	73% helix, 0% strand	Q9Y224

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A, B
IPA · Isopropyl alcohol · additive · 6 copies · chains A, B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 475 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7P3A · N-terminal domain of CGI-99 · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y224 · AlphaFold monomer V2.0 prediction for RNA transcription, translation and transport factor… · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y224
Elsewhere: RCSB PDB 7P3A · PDBe 7P3A · UniProt Q9Y224

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