Research workbench
Thaumatin-like protein of amycolatopsis rifamycinica
Analyse Thaumatin-like protein of amycolatopsis rifamycinica in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7P22
- Type
- protein
- Length
- 441 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thaumatin pathogenesis-like protein
- UniProt
- A0A066TYR3
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thaumatin pathogenesis-like protein | protein | 221 | 8% helix, 34% strand | A0A066TYR3 |
| B | Thaumatin pathogenesis-like protein | protein | 220 | 8% helix, 35% strand | A0A066TYR3 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.44 | 0.76 | 29 | empty |
| 2 | 92 | 0.40 | 0.77 | 19 | empty |
| 3 | 50 | 0.25 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 452 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 7P22 · Thaumatin-like protein of Amycolatopsis rifamycinica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A066TYR3
- Elsewhere: RCSB PDB 7P22 · PDBe 7P22 · UniProt A0A066TYR3
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