Research workbench
2.43 a mycobacterium marinum espb.
Analyse 2.43 a mycobacterium marinum espb. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7P0Z
- Type
- protein
- Length
- 1,652 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Esx-1 secretion-associated protein espb
- UniProt
- B2HNQ9
- Pockets
- 20 · best druggability 0.67
Structure
electron microscopy · 1 distinct chain · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Esx-1 secretion-associated protein espb | protein | 236 | 69% helix, 0% strand | B2HNQ9 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 515 | 0.67 | 0.78 | 55 | empty |
| 2 | 431 | 0.67 | 0.79 | 51 | empty |
| 3 | 529 | 0.66 | 0.77 | 52 | empty |
| 4 | 492 | 0.66 | 0.78 | 47 | empty |
| 5 | 437 | 0.62 | 0.76 | 40 | empty |
Interfaces
7 interfaces between chains.
- A–G · 1023 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 1021 Ų buried · 8 hydrogen bonds · protein-protein
- D–E · 1020 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 1019 Ų buried · 8 hydrogen bonds · protein-protein
- F–G · 1018 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2HNQ9
- Elsewhere: RCSB PDB 7P0Z · PDBe 7P0Z · UniProt B2HNQ9
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