Research workbench
Mechanosensitive channel mscs solubilized with ddm in open conformation
Analyse Mechanosensitive channel mscs solubilized with ddm in open conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OO0
- Type
- protein
- Length
- 1,834 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mechanosensitive channel mscs
- UniProt
- I4SQ31
- Ligands
- PEE
- Pockets
- 20 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain · 53% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Mechanosensitive channel mscs | protein | 262 | 53% helix, 22% strand | I4SQ31 |
Ligands and binding sites
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 7 copies · chains A, B, C, D, E, F, G
- LMT · Dodecyl-beta-D-maltoside · additive · 49 copies · chains A, B, G, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1048 | 0.77 | 0.78 | 74 | PEE, LMT |
| 2 | 1016 | 0.77 | 0.78 | 75 | PEE, LMT |
| 3 | 960 | 0.76 | 0.78 | 77 | PEE |
| 4 | 372 | 0.76 | 0.84 | 21 | empty |
| 5 | 973 | 0.75 | 0.77 | 75 | PEE, LMT |
Interfaces
14 interfaces between chains.
- E–F · 2395 Ų buried · 25 hydrogen bonds · protein-protein
- C–D · 2382 Ų buried · 24 hydrogen bonds · protein-protein
- D–E · 2380 Ų buried · 24 hydrogen bonds · protein-protein
- A–G · 2377 Ų buried · 24 hydrogen bonds · protein-protein
- B–C · 2374 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 7OO0 · Mechanosensitive channel MscS solubilized with DDM in open conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I4SQ31
- Elsewhere: RCSB PDB 7OO0 · PDBe 7OO0 · UniProt I4SQ31
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