Research workbench
Thosea asigna virus rdrp domain
Analyse Thosea asigna virus rdrp domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OM9
- Type
- protein
- Length
- 1,233 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-dependent RNA polymerase
- UniProt
- Q6A562
- Pockets
- 11 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | RNA-dependent RNA polymerase | protein | 617 | 45% helix, 14% strand | Q6A562 |
| A | RNA-dependent RNA polymerase | protein | 616 | 45% helix, 14% strand | Q6A562 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 703 | 0.70 | 0.77 | 73 | empty |
| 2 | 551 | 0.66 | 0.76 | 56 | empty |
| 3 | 572 | 0.65 | 0.76 | 57 | empty |
| 4 | 171 | 0.52 | 0.79 | 34 | empty |
| 5 | 237 | 0.51 | 0.75 | 31 | empty |
Interfaces
1 interface between chains.
- B–A · 2698 Ų buried · 49 hydrogen bonds · protein-protein
Compared structures
- 7OM9 · Thosea asigna virus RdRP domain · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6A562
- Elsewhere: RCSB PDB 7OM9 · PDBe 7OM9 · UniProt Q6A562
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