Research workbench
SPERMIDINE/PUTRESCINE-binding protein complexed with spermidine (monomer form)
Analyse SPERMIDINE/PUTRESCINE-binding protein complexed with spermidine (monomer form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1POT
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SPERMIDINE/PUTRESCINE-binding protein
- UniProt
- P23861
- Ligands
- SPD
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SPERMIDINE/PUTRESCINE-binding protein | protein | 322 | 39% helix, 19% strand | P23861 |
Ligands and binding sites
- SPD · Spermidine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.31 | 0.76 | 14 | empty |
Compared structures
- 1POT · SPERMIDINE/PUTRESCINE-binding protein complexed with spermidine (monomer form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23861
- Elsewhere: RCSB PDB 1POT · PDBe 1POT · UniProt P23861
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