Research workbench
R17A mutant of hfq protein from neisseria meningitidis
Analyse R17A mutant of hfq protein from neisseria meningitidis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OH8
- Type
- protein
- Length
- 203 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-binding protein hfq
- UniProt
- B9VV05
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-binding protein hfq | protein | 67 | 21% helix, 46% strand | B9VV05 |
| B, C | RNA-binding protein hfq | protein | 68 | 21% helix, 44% strand | B9VV05 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.29 | 0.74 | 14 | empty |
Interfaces
2 interfaces between chains.
- B–C · 812 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 798 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7OH8 · R17A mutant of Hfq protein from Neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9VV05
- Elsewhere: RCSB PDB 7OH8 · PDBe 7OH8 · UniProt B9VV05
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