Research workbench
Crystal structure of activated chey fused to the C-terminal domain of chef
Analyse Crystal structure of activated chey fused to the C-terminal domain of chef in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OD9
- Type
- protein
- Length
- 422 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Response regulator receiver protein; C-terminal domain of chef from methanococcus…
- UniProt
- G0H061, G0H062
- Ligands
- BEF, MG
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 4 distinct chains · 51% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Response regulator receiver protein | protein | 129 | 43% helix, 21% strand | G0H061 |
| A | Response regulator receiver protein | protein | 122 | 43% helix, 22% strand | G0H061 |
| C | C-terminal domain of chef from methanococcus maripaludis | protein | 90 | 63% helix, 13% strand | G0H062 |
| F | C-terminal domain of chef from methanococcus maripaludis | protein | 81 | 63% helix, 15% strand | G0H062 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · 2 copies · chains B, F, A, C
- MG · Magnesium ion · metal · 2 copies · chains B, F, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 267 | 0.51 | 0.74 | 28 | empty |
Interfaces
6 interfaces between chains.
- C–F · 2670 Ų buried · 44 hydrogen bonds · protein-protein
- A–F · 491 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 484 Ų buried · 1 hydrogen bond · protein-protein
- B–A · 402 Ų buried · 6 hydrogen bonds · protein-protein
- B–F · 295 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7OD9 · Crystal structure of activated CheY fused to the C-terminal domain of CheF · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0H061
- Every structure of UniProt G0H062
- Elsewhere: RCSB PDB 7OD9 · PDBe 7OD9 · UniProt G0H061 · UniProt G0H062
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