Research workbench
Hepatitis B core protein + sllgrm
Analyse Hepatitis B core protein + sllgrm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OD7
- Type
- protein
- Length
- 586 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein; Sllrgm
- UniProt
- P03146
- Pockets
- 9 · best druggability 0.79
Structure
electron microscopy · 4 distinct chains · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Capsid protein | protein | 150 | 62% helix, 1% strand | P03146 |
| A | Capsid protein | protein | 143 | 68% helix, 0% strand | P03146 |
| C, D | Capsid protein | protein | 144 | 66% helix, 1% strand | P03146 |
| E | Sllrgm | protein | 5 | 0% helix, 0% strand | — |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 163 | 0.79 | 0.94 | 27 | empty |
| 2 | 71 | 0.67 | 0.93 | 27 | empty |
| 3 | 62 | 0.53 | 0.87 | 15 | empty |
| 4 | 81 | 0.52 | 0.84 | 14 | empty |
| 5 | 101 | 0.44 | 0.78 | 17 | empty |
Interfaces
6 interfaces between chains.
- B–A · 2112 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 1981 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 1014 Ų buried · 12 hydrogen bonds · protein-protein
- D–E · 237 Ų buried · 4 hydrogen bonds · protein-protein
- C–E · 166 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7OD7 · Hepatitis B core protein + SLLGRM · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03146
- Elsewhere: RCSB PDB 7OD7 · PDBe 7OD7 · UniProt P03146
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