Research workbench
Alpha-humulene synthase ASR6 from sarocladium schorii
Analyse Alpha-humulene synthase ASR6 from sarocladium schorii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OC5
- Type
- protein
- Length
- 764 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-humulene synthase ASR6
- EC
- 4.2.3.104
- UniProt
- A0A2U8U2L5
- Ligands
- ZN, MG
- Pockets
- 9 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 61% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-humulene synthase ASR6 (EC 4.2.3.104) | protein | 386 | 62% helix, 2% strand | A0A2U8U2L5 |
| B | Alpha-humulene synthase ASR6 (EC 4.2.3.104) | protein | 378 | 60% helix, 1% strand | A0A2U8U2L5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.72 | 0.98 | 21 | empty |
| 2 | 617 | 0.69 | 0.78 | 62 | empty |
| 3 | 468 | 0.69 | 0.80 | 52 | empty |
| 4 | 116 | 0.55 | 0.84 | 36 | empty |
| 5 | 118 | 0.53 | 0.82 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2605 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 7OC5 · Alpha-humulene synthase AsR6 from Sarocladium schorii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2U8U2L5
- Elsewhere: RCSB PDB 7OC5 · PDBe 7OC5 · UniProt A0A2U8U2L5
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