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Structure of the PL6 family alginate lyase PATL3640 from pseudoalteromonas atlantica T6C in complex with 4-deoxy-L-erythro-5- hexoseulose uronic acid
Analyse Structure of the PL6 family alginate lyase PATL3640 from pseudoalteromonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O7T
- Type
- protein
- Length
- 716 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLY(BETA-D-mannuronate) lyase
- EC
- 4.2.2.3
- UniProt
- Q15PP6
- Ligands
- V4W
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLY(BETA-D-mannuronate) lyase (EC 4.2.2.3) | protein | 716 | 5% helix, 44% strand | Q15PP6 |
Ligands and binding sites
- V4W · 4-deoxy-L-erythro-hex-5-ulosuronic acid · ligand · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 490 | 0.65 | 0.77 | 43 | empty |
| 2 | 193 | 0.52 | 0.78 | 30 | empty |
| 3 | 159 | 0.42 | 0.74 | 33 | V4W |
Compared structures
- 7O7T · Structure of the PL6 family alginate lyase Patl3640 from Pseudoalteromonas atlantica T6c… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15PP6
- Elsewhere: RCSB PDB 7O7T · PDBe 7O7T · UniProt Q15PP6
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