Research workbench
Structure of the PL6 family alginate lyase PEDSA0632 from pseudopedobacter saltans
Analyse Structure of the PL6 family alginate lyase PEDSA0632 from pseudopedobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O7A
- Type
- protein
- Length
- 814 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aliginate lyase
- UniProt
- F0S7Y7
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aliginate lyase | protein | 408 | 5% helix, 41% strand | F0S7Y7 |
| B | Aliginate lyase | protein | 406 | 4% helix, 41% strand | F0S7Y7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1002 | 0.80 | 0.81 | 82 | empty |
| 2 | 53 | 0.27 | 0.74 | 12 | empty |
| 3 | 51 | 0.25 | 0.73 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 422 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7O7A · Structure of the PL6 family alginate lyase Pedsa0632 from Pseudopedobacter saltans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0S7Y7
- Elsewhere: RCSB PDB 7O7A · PDBe 7O7A · UniProt F0S7Y7
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